Added design protein 2D

common/lib/capa/capa/inputtypes.py

@@ -863,3 +863,39 @@ class EditAMoleculeInput(InputTypeBase):
         return context
 
 registry.register(EditAMoleculeInput)
+
+#-----------------------------------------------------------------------------
+
+class DesignProtein2dInput(InputTypeBase):
+    """
+    An input type for design of a protein in 2D. Integrates with the Protex java applet.
+
+    Example:
+
+    <designprotein2d width="800" hight="500" target_shape="E;NE;NW;W;SW;E;none" />
+    """
+
+    template = "designprotein2dinput.html"
+    tags = ['designprotein2dinput']
+
+    @classmethod
+    def get_attributes(cls):
+        """
+        Note: width, hight, and target_shape are required.
+        """
+        return [Attribute('width'),
+                Attribute('height'),
+                Attribute('target_shape')
+                ]
+
+    def _extra_context(self):
+        """
+        """
+        context = {
+            'applet_loader': '/static/js/capa/design-protein-2d.js',
+        }
+
+        return context
+
+registry.register(DesignProtein2dInput)
+

common/lib/capa/capa/responsetypes.py

@@ -188,7 +188,7 @@ class LoncapaResponse(object):
         # problem author can make this span display:inline
         if self.xml.get('inline',''):
             tree.set('class','inline')
-            
+
         for item in self.xml:
             # call provided procedure to do the rendering
             item_xhtml = renderer(item)
@@ -875,7 +875,8 @@ def sympy_check2():
 
     allowed_inputfields = ['textline', 'textbox', 'crystallography',
                             'chemicalequationinput', 'vsepr_input',
-                            'drag_and_drop_input', 'editamoleculeinput']
+                            'drag_and_drop_input', 'editamoleculeinput',
+                            'designprotein2dinput']
 
     def setup_response(self):
         xml = self.xml

common/lib/capa/capa/templates/designprotein2dinput.html

@@ -0,0 +1,39 @@
+<section id="designprotein2dinput_${id}" class="designprotein2dinput">
+    <div class="script_placeholder" data-src="${applet_loader}"/>
+
+    % if status == 'unsubmitted':
+    <div class="unanswered" id="status_${id}">
+    % elif status == 'correct':
+    <div class="correct" id="status_${id}">
+    % elif status == 'incorrect':
+    <div class="incorrect" id="status_${id}">
+    % elif status == 'incomplete':
+    <div class="incorrect" id="status_${id}">
+    % endif
+
+    <object type="application/x-java-applet" id="applet_${id}" class="applet" width="${width}" height="${height}">
+      <param name="archive" value="/static/applets/capa/Protex.jar" />
+      <param name="code" value="protex.ProtexApplet.class" />
+      <param name="TARGET_SHAPE" value="${target_shape}" />
+      Applet failed to run.  No Java plug-in was found.
+    </object>
+
+    <input type="hidden" name="input_${id}" id="input_${id}" value="${value|h}"/>
+
+    <p class="status">
+      % if status == 'unsubmitted':
+      unanswered
+      % elif status == 'correct':
+      correct
+      % elif status == 'incorrect':
+      incorrect
+      % elif status == 'incomplete':
+      incomplete
+      % endif
+    </p>
+
+    <p id="answer_${id}" class="answer"></p>
+  % if status in ['unsubmitted', 'correct', 'incorrect', 'incomplete']:
+  </div>
+% endif
+</section>

common/static/js/capa/design-protein-2d.js

@@ -0,0 +1,27 @@
+(function () {
+    var timeout = 1000;
+
+    function initializeApplet(applet) {
+        console.log("Initializing " + applet);
+        waitForApplet(applet);
+    }
+
+    function waitForApplet(applet) {
+        if (applet.isActive && applet.isActive()) {
+            console.log("Applet is ready.");
+            var answerStr = applet.checkAnswer();
+            console.log(answerStr);
+            var input = $('.designprotein2dinput input');
+            console.log(input);
+            input.val(answerStr);
+        } else if (timeout > 30 * 1000) {
+            console.error("Applet did not load on time.");
+        } else {
+            console.log("Waiting for applet...");
+            setTimeout(function() { waitForApplet(applet); }, timeout);
+        }
+    }
+    
+    var applets = $('.designprotein2dinput object');
+    applets.each(function(i, el) { initializeApplet(el); });
+}).call(this);