From 9dbe91190738dae5fc9a2dcc93964841c2b4f8e3 Mon Sep 17 00:00:00 2001
From: jmclaus <jmc@edx.org>
Date: Wed, 13 Feb 2013 09:45:44 +0100
Subject: [PATCH 1/2] Back to last version of Protex

---
 common/static/js/capa/design-protein-2d.js    |  35 +-
 ...0950A947CFA1ACD8CC83306B9515908.cache.html | 750 -----------------
 ...096DE2845FBF7D7D836936320AD0AC4.cache.html | 746 -----------------
 ...56E8E1EA8930F0EA56B8973ACF7A92B.cache.html | 735 -----------------
 ...9CC89519B0E1FCB47B935AC9FE13D7B.cache.html | 743 +++++++++++++++++
 ...CE0BC9042E03326D1C86C810404FE4A.cache.html | 742 -----------------
 ...E05B1CD5BFCAF7D53C7C64D84318178.cache.html | 750 +++++++++++++++++
 ...9DCE0145624582CBBEEA35B857D07CD.cache.html | 759 -----------------
 ...D83FC6A58D4713A62FE989ECFDECF12.cache.html | 742 -----------------
 ...824A958AB642DC2213DFFDAC640BEAA.cache.html | 760 ++++++++++++++++++
 ...9267DE8FB02F8B995B4A58C66C76E29.cache.html | 758 +++++++++++++++++
 ...275492F7098103BCB05F4F86ABF6218.cache.html | 750 +++++++++++++++++
 ...3301B0E65F38C7FCF2EF3764B3BB0B6.cache.html | 754 +++++++++++++++++
 .../static/js/capa/protex/protex.nocache.js   |   4 +-
 14 files changed, 4547 insertions(+), 4481 deletions(-)
 delete mode 100644 common/static/js/capa/protex/00950A947CFA1ACD8CC83306B9515908.cache.html
 delete mode 100644 common/static/js/capa/protex/0096DE2845FBF7D7D836936320AD0AC4.cache.html
 delete mode 100644 common/static/js/capa/protex/356E8E1EA8930F0EA56B8973ACF7A92B.cache.html
 create mode 100644 common/static/js/capa/protex/39CC89519B0E1FCB47B935AC9FE13D7B.cache.html
 delete mode 100644 common/static/js/capa/protex/5CE0BC9042E03326D1C86C810404FE4A.cache.html
 create mode 100644 common/static/js/capa/protex/6E05B1CD5BFCAF7D53C7C64D84318178.cache.html
 delete mode 100644 common/static/js/capa/protex/89DCE0145624582CBBEEA35B857D07CD.cache.html
 delete mode 100644 common/static/js/capa/protex/8D83FC6A58D4713A62FE989ECFDECF12.cache.html
 create mode 100644 common/static/js/capa/protex/C824A958AB642DC2213DFFDAC640BEAA.cache.html
 create mode 100644 common/static/js/capa/protex/D9267DE8FB02F8B995B4A58C66C76E29.cache.html
 create mode 100644 common/static/js/capa/protex/F275492F7098103BCB05F4F86ABF6218.cache.html
 create mode 100644 common/static/js/capa/protex/F3301B0E65F38C7FCF2EF3764B3BB0B6.cache.html

diff --git a/common/static/js/capa/design-protein-2d.js b/common/static/js/capa/design-protein-2d.js
index 18945a401a..fb97b93956 100644
--- a/common/static/js/capa/design-protein-2d.js
+++ b/common/static/js/capa/design-protein-2d.js
@@ -7,15 +7,40 @@
         if (typeof(protex) !== "undefined" && protex) {
             protex.onInjectionDone("protex");
         }
-        if (typeof(protex) !== "undefined") {
-            initializeProtex();    
-        }
+        /*if (typeof(protex) !== "undefined") {
+            //initializeProtex();    
+        }*/
         else {
             setTimeout(function() { waitForProtex(); }, timeout);
         }
     }
     
-    function initializeProtex() {
+    //NOTE:
+    // Protex uses three global functions:
+    // protexSetTargetShape (exported from GWT)
+    // exported protexCheckAnswer (exported from GWT)
+    // It calls protexIsReady with a deferred command when it has finished 
+    // initialization and has drawn itself
+    
+    protexIsReady = function() {
+        //Load target shape
+        var target_shape = $('#target_shape').val();
+        protexSetTargetShape(target_shape);
+            
+        //Get answer from protex and store it into the hidden input field
+        //when Check button is clicked
+        var problem = $('#protex_container').parents('.problem');
+        var check_button = problem.find('input.check');
+        var input_field = problem.find('input[type=hidden]');
+        check_button.on('click', function() {
+            var protex_answer = protexCheckAnswer();
+            var value = {protex_answer: protex_answer};
+            input_field.val(JSON.stringify(value));
+            console.log(JSON.stringify(value));
+        });              
+    };
+    
+    /*function initializeProtex() {
         //Check to see if the two exported GWT functions protexSetTargetShape 
         // and protexCheckAnswer have been appended to global scope -- this 
         //happens at the end of onModuleLoad() in GWT
@@ -45,5 +70,5 @@
         else {
             setTimeout(function() {initializeProtex(); }, timeout);
         }
-    }
+    }*/
 }).call(this);
diff --git a/common/static/js/capa/protex/00950A947CFA1ACD8CC83306B9515908.cache.html b/common/static/js/capa/protex/00950A947CFA1ACD8CC83306B9515908.cache.html
deleted file mode 100644
index c236939b62..0000000000
--- a/common/static/js/capa/protex/00950A947CFA1ACD8CC83306B9515908.cache.html
+++ /dev/null
@@ -1,750 +0,0 @@
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+w[Cb]=function(){var b=navigator.userAgent.toLowerCase();var c=function(a){return parseInt(a[1])*1000+parseInt(a[2])};if(function(){return b.indexOf(Db)!=-1}())return Db;if(function(){return b.indexOf(Eb)!=-1}())return Fb;if(function(){return b.indexOf(Gb)!=-1&&n.documentMode>=9}())return Hb;if(function(){return b.indexOf(Gb)!=-1&&n.documentMode>=8}())return Ib;if(function(){var a=/msie ([0-9]+)\.([0-9]+)/.exec(b);if(a&&a.length==3)return c(a)>=6000}())return Jb;if(function(){return b.indexOf(Kb)!=-1}())return Lb;return Mb};v[Cb]={gecko1_8:0,ie6:1,ie8:2,ie9:3,opera:4,safari:5};protex.onScriptLoad=function(){if(I){r=true;C()}};protex.onInjectionDone=function(){q=true;o&&o({moduleName:Q,sessionId:p,subSystem:R,evtGroup:Nb,millis:(new Date).getTime(),type:Y});C()};E();D();var K;var L;if(B()){if(m.external&&(m.external.initModule&&m.external.initModule(Q))){m.location.reload();return}L=Ob;K=P}o&&o({moduleName:Q,sessionId:p,subSystem:R,evtGroup:S,millis:(new Date).getTime(),type:Pb});if(!B()){try{G([Db],Qb);G([Ib],Rb);G([Fb],Sb);G([Hb],Tb);G([Jb],Ub);G([Lb],Vb);K=x[H(Cb)];var M=K.indexOf(Wb);if(M!=-1){y=Number(K.substring(M+1));K=K.substring(0,M)}L=K+Xb}catch(a){return}}var N;function O(){if(!s){s=true;if(!__gwt_stylesLoaded[Yb]){var a=n.createElement(Zb);__gwt_stylesLoaded[Yb]=a;a.setAttribute($b,_b);a.setAttribute(ac,t+Yb);n.getElementsByTagName(bc)[0].appendChild(a)}C();if(n.removeEventListener){n.removeEventListener(cc,O,false)}if(N){clearInterval(N)}}}
 if(n.addEventListener){n.addEventListener(cc,function(){J();O()},false)}var N=setInterval(function(){if(/loaded|complete/.test(n.readyState)){J();O()}},50);o&&o({moduleName:Q,sessionId:p,subSystem:R,evtGroup:S,millis:(new Date).getTime(),type:Y});o&&o({moduleName:Q,sessionId:p,subSystem:R,evtGroup:Nb,millis:(new Date).getTime(),type:T});n.write(dc)}
 protex();
\ No newline at end of file

From 259bd8817f5c62da5700cb9fb1451f9eea58ace0 Mon Sep 17 00:00:00 2001
From: John Hess <mgojohn@gmail.com>
Date: Wed, 13 Feb 2013 15:10:32 -0500
Subject: [PATCH 2/2] Moved onclick to 'fold' button instead of to courseware's
 button

---
 common/static/js/capa/design-protein-2d.js | 23 ++++++++++++++++------
 1 file changed, 17 insertions(+), 6 deletions(-)

diff --git a/common/static/js/capa/design-protein-2d.js b/common/static/js/capa/design-protein-2d.js
index fb97b93956..e068fa8dcf 100644
--- a/common/static/js/capa/design-protein-2d.js
+++ b/common/static/js/capa/design-protein-2d.js
@@ -22,6 +22,15 @@
     // It calls protexIsReady with a deferred command when it has finished 
     // initialization and has drawn itself
     
+    function updateProtexField() {
+            var problem = $('#protex_container').parents('.problem');
+            var input_field = problem.find('input[type=hidden]');
+            var protex_answer = protexCheckAnswer();
+            var value = {protex_answer: protex_answer};
+            //console.log(JSON.stringify(value));
+            input_field.val(JSON.stringify(value));
+        }
+        
     protexIsReady = function() {
         //Load target shape
         var target_shape = $('#target_shape').val();
@@ -29,16 +38,18 @@
             
         //Get answer from protex and store it into the hidden input field
         //when Check button is clicked
-        var problem = $('#protex_container').parents('.problem');
-        var check_button = problem.find('input.check');
-        var input_field = problem.find('input[type=hidden]');
-        check_button.on('click', function() {
+        var fold_button = $("#fold-button");
+        fold_button.on('click', function(){
+            var problem = $('#protex_container').parents('.problem');
+            var input_field = problem.find('input[type=hidden]');
             var protex_answer = protexCheckAnswer();
             var value = {protex_answer: protex_answer};
+            //console.log(JSON.stringify(value));
             input_field.val(JSON.stringify(value));
-            console.log(JSON.stringify(value));
-        });              
+        });
+        updateProtexField();              
     };
+
     
     /*function initializeProtex() {
         //Check to see if the two exported GWT functions protexSetTargetShape