diff --git a/common/lib/xmodule/xmodule/gst_module.py b/common/lib/xmodule/xmodule/gst_module.py index aaa6e11198..7e61264929 100644 --- a/common/lib/xmodule/xmodule/gst_module.py +++ b/common/lib/xmodule/xmodule/gst_module.py @@ -25,6 +25,8 @@ class GraphicalSliderToolModule(XModule): js = { 'js': [ + resource_string(__name__, 'js/src/graphical_slider_tool/jstat-1.0.0.min.js'), + resource_string(__name__, 'js/src/graphical_slider_tool/gst_main.js'), resource_string(__name__, 'js/src/graphical_slider_tool/state.js'), resource_string(__name__, 'js/src/graphical_slider_tool/logme.js'), diff --git a/common/lib/xmodule/xmodule/js/src/graphical_slider_tool/graph.js b/common/lib/xmodule/xmodule/js/src/graphical_slider_tool/graph.js index ce4d714cce..39bc1bd9bf 100644 --- a/common/lib/xmodule/xmodule/js/src/graphical_slider_tool/graph.js +++ b/common/lib/xmodule/xmodule/js/src/graphical_slider_tool/graph.js @@ -403,11 +403,12 @@ define('Graph', ['logme'], function (logme) { obj['@line'], obj['@dot'], obj['@label'], - obj['@point_size'] + obj['@point_size'], + obj['@fill_area'] ); } - function addFunction(funcString, color, line, dot, label, pointSize) { + function addFunction(funcString, color, line, dot, label, pointSize, fillArea) { var newFunctionObject, func, paramNames; // The main requirement is function string. Without it we can't @@ -422,6 +423,8 @@ define('Graph', ['logme'], function (logme) { // will break. funcString = $('
').html(funcString).text(); + logme('graph: funcstr = "' + funcString + '"'); + // Some defaults. If no options are set for the graph, we will // make sure that at least a line is drawn for a function. newFunctionObject = { @@ -476,17 +479,17 @@ define('Graph', ['logme'], function (logme) { } if (typeof line === 'string') { - if (line === 'true') { + if (line.toLowerCase() === 'true') { newFunctionObject['line'] = true; - } else if (line === 'false') { + } else if (line.toLowerCase() === 'false') { newFunctionObject['line'] = false; } } if (typeof dot === 'string') { - if (dot === 'true') { + if (dot.toLowerCase() === 'true') { newFunctionObject['dot'] = true; - } else if (dot === 'false') { + } else if (dot.toLowerCase() === 'false') { newFunctionObject['dot'] = false; } } @@ -504,6 +507,21 @@ define('Graph', ['logme'], function (logme) { newFunctionObject['line'] = true; } + if (newFunctionObject['line'] === true) { + if (typeof fillArea === 'string') { + if (fillArea.toLowerCase() === 'true') { + newFunctionObject['fillArea'] = true; + } else if (fillArea.toLowerCase() === 'false') { + newFunctionObject['fillArea'] = false; + } else { + logme('ERROR: The attribute fill_area should be either "true" or "false".'); + logme('fill_area = "' + fillArea + '".'); + + return; + } + } + } + if (typeof label === 'string') { newFunctionObject['label'] = label; } @@ -622,6 +640,10 @@ define('Graph', ['logme'], function (logme) { 'show': functionObj.line }; + if (functionObj.hasOwnProperty('fillArea') === true) { + seriesObj.lines.fill = functionObj.fillArea; + } + // Should each data point be represented by a point on the // graph? seriesObj.points = { diff --git a/common/lib/xmodule/xmodule/js/src/graphical_slider_tool/jstat-1.0.0.min.js b/common/lib/xmodule/xmodule/js/src/graphical_slider_tool/jstat-1.0.0.min.js new file mode 100644 index 0000000000..7f9cd4a124 --- /dev/null +++ b/common/lib/xmodule/xmodule/js/src/graphical_slider_tool/jstat-1.0.0.min.js @@ -0,0 +1,236 @@ +function jstat(){} +j=jstat;(function(){var initializing=false,fnTest=/xyz/.test(function(){xyz;})?/\b_super\b/:/.*/;this.Class=function(){};Class.extend=function(prop){var _super=this.prototype;initializing=true;var prototype=new this();initializing=false;for(var name in prop){prototype[name]=typeof prop[name]=="function"&&typeof _super[name]=="function"&&fnTest.test(prop[name])?(function(name,fn){return function(){var tmp=this._super;this._super=_super[name];var ret=fn.apply(this,arguments);this._super=tmp;return ret;};})(name,prop[name]):prop[name];} +function Class(){if(!initializing&&this.init) +this.init.apply(this,arguments);} +Class.prototype=prototype;Class.constructor=Class;Class.extend=arguments.callee;return Class;};})();jstat.ONE_SQRT_2PI=0.3989422804014327;jstat.LN_SQRT_2PI=0.9189385332046727417803297;jstat.LN_SQRT_PId2=0.225791352644727432363097614947;jstat.DBL_MIN=2.22507e-308;jstat.DBL_EPSILON=2.220446049250313e-16;jstat.SQRT_32=5.656854249492380195206754896838;jstat.TWO_PI=6.283185307179586;jstat.DBL_MIN_EXP=-999;jstat.SQRT_2dPI=0.79788456080287;jstat.LN_SQRT_PI=0.5723649429247;jstat.seq=function(min,max,length){var r=new Range(min,max,length);return r.getPoints();} +jstat.dnorm=function(x,mean,sd,log){if(mean==null)mean=0;if(sd==null)sd=1;if(log==null)log=false;var n=new NormalDistribution(mean,sd);if(!isNaN(x)){return n._pdf(x,log);}else if(x.length){var res=[];for(var i=0;i
');$('#'+hash).dialog({modal:false,width:475,height:475,resizable:true,resize:function(){$.plot($('#graph-'+hash),[series],flotOpt);},open:function(event,ui){var id='#graph-'+hash;$.plot($('#graph-'+hash),[series],flotOpt);}})} +jstat.log10=function(arg){return Math.log(arg)/Math.LN10;} +jstat.toSigFig=function(num,n){if(num==0){return 0;} +var d=Math.ceil(jstat.log10(num<0?-num:num));var power=n-parseInt(d);var magnitude=Math.pow(10,power);var shifted=Math.round(num*magnitude);return shifted/magnitude;} +jstat.trunc=function(x){return(x>0)?Math.floor(x):Math.ceil(x);} +jstat.isFinite=function(x){return(!isNaN(x)&&(x!=Number.POSITIVE_INFINITY)&&(x!=Number.NEGATIVE_INFINITY));} +jstat.dopois_raw=function(x,lambda,give_log){if(lambda==0){if(x==0){return(give_log)?0.0:1.0;} +return(give_log)?Number.NEGATIVE_INFINITY:0.0;} +if(!jstat.isFinite(lambda))return(give_log)?Number.NEGATIVE_INFINITY:0.0;if(x<0)return(give_log)?Number.NEGATIVE_INFINITY:0.0;if(x<=lambda*jstat.DBL_MIN){return(give_log)?-lambda:Math.exp(-lambda);} +if(lambda0.1*(x+np)){v=(x-np)/(x+np);s=(x-np)*v;ej=2*x*v;v=v*v;for(j=1;;j++){ej*=v;s1=s+ej/((j<<1)+1);if(s1==s) +return(s1);s=s1;}} +return(x*Math.log(x/np)+np-x);} +jstat.stirlerr=function(n){var S0=0.083333333333333333333;var S1=0.00277777777777777777778;var S2=0.00079365079365079365079365;var S3=0.000595238095238095238095238;var S4=0.0008417508417508417508417508;var sferr_halves=[0.0,0.1534264097200273452913848,0.0810614667953272582196702,0.0548141210519176538961390,0.0413406959554092940938221,0.03316287351993628748511048,0.02767792568499833914878929,0.02374616365629749597132920,0.02079067210376509311152277,0.01848845053267318523077934,0.01664469118982119216319487,0.01513497322191737887351255,0.01387612882307074799874573,0.01281046524292022692424986,0.01189670994589177009505572,0.01110455975820691732662991,0.010411265261972096497478567,0.009799416126158803298389475,0.009255462182712732917728637,0.008768700134139385462952823,0.008330563433362871256469318,0.007934114564314020547248100,0.007573675487951840794972024,0.007244554301320383179543912,0.006942840107209529865664152,0.006665247032707682442354394,0.006408994188004207068439631,0.006171712263039457647532867,0.005951370112758847735624416,0.005746216513010115682023589,0.005554733551962801371038690];var nn;if(n<=15.0){nn=n+n;if(nn==parseInt(nn))return(sferr_halves[parseInt(nn)]);return(jstat.lgamma(n+1.0)-(n+0.5)*Math.log(n)+n-jstat.LN_SQRT_2PI);} +nn=n*n;if(n>500)return((S0-S1/nn)/n);if(n>80)return((S0-(S1-S2/nn)/nn)/n);if(n>35)return((S0-(S1-(S2-S3/nn)/nn)/nn)/n);return((S0-(S1-(S2-(S3-S4/nn)/nn)/nn)/nn)/n);} +jstat.lgamma=function(x){function lgammafn_sign(x,sgn){var ans,y,sinpiy;var xmax=2.5327372760800758e+305;var dxrel=1.490116119384765696e-8;if(sgn!=null)sgn=1;if(isNaN(x))return x;if(x<0&&(Math.floor(-x)%2.0)==0) +if(sgn!=null)sgn=-1;if(x<=0&&x==jstat.trunc(x)){console.warn("Negative integer argument in lgammafn_sign");return Number.POSITIVE_INFINITY;} +y=Math.abs(x);if(y<=10)return Math.log(Math.abs(jstat.gamma(x)));if(y>xmax){console.warn("Illegal arguement passed to lgammafn_sign");return Number.POSITIVE_INFINITY;} +if(x>0){if(x>1e17){return(x*(Math.log(x)-1.0));}else if(x>4934720.0){return(jstat.LN_SQRT_2PI+(x-0.5)*Math.log(x)-x);}else{return jstat.LN_SQRT_2PI+(x-0.5)*Math.log(x)-x+jstat.lgammacor(x);}} +sinpiy=Math.abs(Math.sin(Math.PI*y));if(sinpiy==0){throw"Should never happen!!";} +ans=jstat.LN_SQRT_PId2+(x-0.5)*Math.log(y)-x-Math.log(sinpiy)-jstat.lgammacor(y);if(Math.abs((x-jstat.trunc(x-0.5))*ans/x)=jstat.DBL_MIN){res=1.0/y;}else{return(Number.POSITIVE_INFINITY);}}else if(y<12.0){yi=y;if(y<1.0){z=y;y+=1.0;}else{n=parseInt(y)-1;y-=parseFloat(n);z=y-1.0;} +xnum=0.0;xden=1.0;for(i=0;i<8;++i){xnum=(xnum+p[i])*z;xden=xden*z+q[i];} +res=xnum/xden+1.0;if(yiy){for(i=0;i=xmax){throw"Underflow error in lgammacor";}else if(xMAXIT){console.warn("a or b too big, or MAXIT too small in betacf: "+a+", "+b+", "+x+", "+h);return h;} +if(isNaN(h)){console.warn(a+", "+b+", "+x);} +return h;} +var bt;if(x<0.0||x>1.0){throw"bad x in routine incompleteBeta";} +if(x==0.0||x==1.0){bt=0.0;}else{bt=Math.exp(jstat.lgamma(a+b)-jstat.lgamma(a)-jstat.lgamma(b)+a*Math.log(x)+b*Math.log(1.0-x));} +if(x<(a+1.0)/(a+b+2.0)){return bt*betacf(a,b,x)/a;}else{return 1.0-bt*betacf(b,a,1.0-x)/b;}} +jstat.chebyshev=function(x,a,n){var b0,b1,b2,twox;var i;if(n<1||n>1000)return Number.NaN;if(x<-1.1||x>1.1)return Number.NaN;twox=x*2;b2=b1=0;b0=0;for(i=1;i<=n;i++){b2=b1;b1=b0;b0=twox*b1-b2+a[n-i];} +return(b0-b2)*0.5;} +jstat.fmin2=function(x,y){return(x1){return Math.log(1+x);} +for(var i=1;i0.697)return Math.exp(x)-1;if(a>1e-8){y=Math.exp(x)-1;}else{y=(x/2+1)*x;} +y-=(1+y)*(jstat.log1p(y)-x);return y;} +jstat.logBeta=function(a,b){var corr,p,q;p=q=a;if(bq)q=b;if(p<0){console.warn('Both arguements must be >= 0');return Number.NaN;} +else if(p==0){return Number.POSITIVE_INFINITY;} +else if(!jstat.isFinite(q)){return Number.NEGATIVE_INFINITY;} +if(p>=10){corr=jstat.lgammacor(p)+jstat.lgammacor(q)-jstat.lgammacor(p+q);return Math.log(q)*-0.5+jstat.LN_SQRT_2PI+corr ++(p-0.5)*Math.log(p/(p+q))+q*jstat.log1p(-p/(p+q));} +else if(q>=10){corr=jstat.lgammacor(q)-jstat.lgammacor(p+q);return jstat.lgamma(p)+corr+p-p*Math.log(p+q) ++(q-0.5)*jstat.log1p(-p/(p+q));} +else +return Math.log(jstat.gamma(p)*(jstat.gamma(q)/jstat.gamma(p+q)));} +jstat.dbinom_raw=function(x,n,p,q,give_log){if(give_log==null)give_log=false;var lf,lc;if(p==0){if(x==0){return(give_log)?0.0:1.0;}else{return(give_log)?Number.NEGATIVE_INFINITY:0.0;}} +if(q==0){if(x==n){return(give_log)?0.0:1.0;}else{return(give_log)?Number.NEGATIVE_INFINITY:0.0;}} +if(x==0){if(n==0)return(give_log)?0.0:1.0;lc=(p<0.1)?-jstat.bd0(n,n*q)-n*p:n*Math.log(q);return(give_log)?lc:Math.exp(lc);} +if(x==n){lc=(q<0.1)?-jstat.bd0(n,n*p)-n*q:n*Math.log(p);return(give_log)?lc:Math.exp(lc);} +if(x<0||x>n)return(give_log)?Number.NEGATIVE_INFINITY:0.0;lc=jstat.stirlerr(n)-jstat.stirlerr(x)-jstat.stirlerr(n-x)-jstat.bd0(x,n*p)-jstat.bd0(n-x,n*q);lf=Math.log(jstat.TWO_PI)+Math.log(x)+jstat.log1p(-x/n);return(give_log)?lc-0.5*lf:Math.exp(lc-0.5*lf);} +jstat.max=function(values){var max=Number.NEGATIVE_INFINITY;for(var i=0;imax){max=values[i];}} +return max;} +var Range=Class.extend({init:function(min,max,numPoints){this._minimum=parseFloat(min);this._maximum=parseFloat(max);this._numPoints=parseFloat(numPoints);},getMinimum:function(){return this._minimum;},getMaximum:function(){return this._maximum;},getNumPoints:function(){return this._numPoints;},getPoints:function(){var results=[];var x=this._minimum;var step=(this._maximum-this._minimum)/(this._numPoints-1);for(var i=0;ieps){xsq=x*x;xnum=a[4]*xsq;xden=xsq;for(i=0;i<3;++i){xnum=(xnum+a[i])*xsq;xden=(xden+b[i])*xsq;}}else{xnum=xden=0.0;} +temp=x*(xnum+a[3])/(xden+b[3]);if(lower)cum=0.5+temp;if(upper)ccum=0.5-temp;if(log_p){if(lower)cum=Math.log(cum);if(upper)ccum=Math.log(ccum);}}else if(y<=jstat.SQRT_32){xnum=c[8]*y;xden=y;for(i=0;i<7;++i){xnum=(xnum+c[i])*y;xden=(xden+d[i])*y;} +temp=(xnum+c[7])/(xden+d[7]);xsq=jstat.trunc(x*16)/16;del=(x-xsq)*(x+xsq);if(log_p){cum=(-xsq*xsq*0.5)+(-del*0.5)+Math.log(temp);if((lower&&x>0.)||(upper&&x<=0.)) +ccum=jstat.log1p(-Math.exp(-xsq*xsq*0.5)*Math.exp(-del*0.5)*temp);} +else{cum=Math.exp(-xsq*xsq*0.5)*Math.exp(-del*0.5)*temp;ccum=1.0-cum;} +if(x>0.0){temp=cum;if(lower){cum=ccum;} +ccum=temp;}} +else if((log_p&&y<1e170)||(lower&&-37.51930.)||(upper&&x<=0.)) +ccum=jstat.log1p(-Math.exp(-xsq*xsq*0.5)*Math.exp(-del*0.5)*temp);} +else{cum=Math.exp(-xsq*xsq*0.5)*Math.exp(-del*0.5)*temp;ccum=1.0-cum;} +if(x>0.0){temp=cum;if(lower){cum=ccum;} +ccum=temp;}}else{if(x>0){cum=(log_p)?0.0:1.0;ccum=(log_p)?Number.NEGATIVE_INFINITY:0.0;}else{cum=(log_p)?Number.NEGATIVE_INFINITY:0.0;ccum=(log_p)?0.0:1.0;}} +return[cum,ccum];} +var p,cp;var mu=this._mean;var sigma=this._sigma;var R_DT_0,R_DT_1;if(lower_tail){if(log_p){R_DT_0=Number.NEGATIVE_INFINITY;R_DT_1=0.0;}else{R_DT_0=0.0;R_DT_1=1.0;}}else{if(log_p){R_DT_0=0.0;R_DT_1=Number.NEGATIVE_INFINITY;}else{R_DT_0=1.0;R_DT_1=0.0;}} +if(!jstat.isFinite(x)&&mu==x)return Number.NaN;if(sigma<=0){if(sigma<0){console.warn("Sigma is less than 0");return Number.NaN;} +return(x0){var nd=new NormalDistribution(meanlog,sdlog);return nd._cdf(Math.log(x),lower_tail,log_p);} +if(lower_tail){return(log_p)?Number.NEGATIVE_INFINITY:0.0;}else{return(log_p)?0.0:1.0;}},getLocation:function(){return this._location;},getScale:function(){return this._scale;},getMean:function(){return Math.exp((this._location+this._scale)/2);},getVariance:function(){var ans=(Math.exp(this._scale)-1)*Math.exp(2*this._location+this._scale);return ans;}});var GammaDistribution=ContinuousDistribution.extend({init:function(shape,scale){this._super('Gamma');this._shape=parseFloat(shape);this._scale=parseFloat(scale);this._string="Gamma ("+this._shape.toFixed(2)+", "+this._scale.toFixed(2)+")";},_pdf:function(x,give_log){var pr;var shape=this._shape;var scale=this._scale;if(give_log==null){give_log=false;} +if(shape<0||scale<=0){throw"Illegal argument in _pdf";} +if(x<0){return(give_log)?Number.NEGATIVE_INFINITY:0.0;} +if(shape==0){return(x==0)?Number.POSITIVE_INFINITY:(give_log)?Number.NEGATIVE_INFINITY:0.0;} +if(x==0){if(shape<1)return Number.POSITIVE_INFINITY;if(shape>1)return(give_log)?Number.NEGATIVE_INFINITY:0.0;return(give_log)?-Math.log(scale):1/scale;} +if(shape<1){pr=jstat.dopois_raw(shape,x/scale,give_log);return give_log?pr+Math.log(shape/x):pr*shape/x;} +pr=jstat.dopois_raw(shape-1,x/scale,give_log);return give_log?pr-Math.log(scale):pr/scale;},_cdf:function(x,lower_tail,log_p){function USE_PNORM(){pn1=Math.sqrt(alph)*3.0*(Math.pow(x/alph,1.0/3.0)+1.0/(9.0*alph)-1.0);var norm_dist=new NormalDistribution(0.0,1.0);return norm_dist._cdf(pn1,lower_tail,log_p);} +if(lower_tail==null)lower_tail=true;if(log_p==null)log_p=false;var alph=this._shape;var scale=this._scale;var xbig=1.0e+8;var xlarge=1.0e+37;var alphlimit=1e5;var pn1,pn2,pn3,pn4,pn5,pn6,arg,a,b,c,an,osum,sum,n,pearson;if(alph<=0.||scale<=0.){console.warn('Invalid gamma params in _cdf');return Number.NaN;} +x/=scale;if(isNaN(x))return x;if(x<=0.0){if(lower_tail){return(log_p)?Number.NEGATIVE_INFINITY:0.0;}else{return(log_p)?0.0:1.0;}} +if(alph>alphlimit){return USE_PNORM();} +if(x>xbig*alph){if(x>jstat.DBL_MAX*alph){if(lower_tail){return(log_p)?0.0:1.0;}else{return(log_p)?Number.NEGATIVE_INFINITY:0.0;}}else{return USE_PNORM();}} +if(x<=1.0||xjstat.DBL_EPSILON*sum);}else{pearson=0;arg=alph*Math.log(x)-x-jstat.lgamma(alph);a=1.-alph;b=a+x+1.;pn1=1.;pn2=x;pn3=x+1.;pn4=x*b;sum=pn3/pn4;for(n=1;;n++){a+=1.;b+=2.;an=a*n;pn5=b*pn3-an*pn1;pn6=b*pn4-an*pn2;if(Math.abs(pn6)>0.){osum=sum;sum=pn5/pn6;if(Math.abs(osum-sum)<=jstat.DBL_EPSILON*jstat.fmin2(1.0,sum)) +break;} +pn1=pn3;pn2=pn4;pn3=pn5;pn4=pn6;if(Math.abs(pn5)>=xlarge){pn1/=xlarge;pn2/=xlarge;pn3/=xlarge;pn4/=xlarge;}}} +arg+=Math.log(sum);lower_tail=(lower_tail==pearson);if(log_p&&lower_tail) +return(arg);if(lower_tail){return Math.exp(arg);}else{if(log_p){return(arg>-Math.LN2)?Math.log(-jstat.expm1(arg)):jstat.log1p(-Math.exp(arg));}else{return-jstat.expm1(arg);}}},getShape:function(){return this._shape;},getScale:function(){return this._scale;},getMean:function(){return this._shape*this._scale;},getVariance:function(){return this._shape*Math.pow(this._scale,2);}});var BetaDistribution=ContinuousDistribution.extend({init:function(alpha,beta){this._super('Beta');this._alpha=parseFloat(alpha);this._beta=parseFloat(beta);this._string="Beta ("+this._alpha.toFixed(2)+", "+this._beta.toFixed(2)+")";},_pdf:function(x,give_log){if(give_log==null)give_log=false;var a=this._alpha;var b=this._beta;var lval;if(a<=0||b<=0){console.warn('Illegal arguments in _pdf');return Number.NaN;} +if(x<0||x>1){return(give_log)?Number.NEGATIVE_INFINITY:0.0;} +if(x==0){if(a>1){return(give_log)?Number.NEGATIVE_INFINITY:0.0;} +if(a<1){return Number.POSITIVE_INFINITY;} +return(give_log)?Math.log(b):b;} +if(x==1){if(b>1){return(give_log)?Number.NEGATIVE_INFINITY:0.0;} +if(b<1){return Number.POSITIVE_INFINITY;} +return(give_log)?Math.log(a):a;} +if(a<=2||b<=2){lval=(a-1)*Math.log(x)+(b-1)*jstat.log1p(-x)-jstat.logBeta(a,b);}else{lval=Math.log(a+b-1)+jstat.dbinom_raw(a-1,a+b-2,x,1-x,true);} +return(give_log)?lval:Math.exp(lval);},_cdf:function(x,lower_tail,log_p){if(lower_tail==null)lower_tail=true;if(log_p==null)log_p=false;var pin=this._alpha;var qin=this._beta;if(pin<=0||qin<=0){console.warn('Invalid argument in _cdf');return Number.NaN;} +if(x<=0){if(lower_tail){return(log_p)?Number.NEGATIVE_INFINITY:0.0;}else{return(log_p)?0.1:1.0;}} +if(x>=1){if(lower_tail){return(log_p)?0.1:1.0;}else{return(log_p)?Number.NEGATIVE_INFINITY:0.0;}} +return jstat.incompleteBeta(pin,qin,x);},getAlpha:function(){return this._alpha;},getBeta:function(){return this._beta;},getMean:function(){return this._alpha/(this._alpha+this._beta);},getVariance:function(){var ans=(this._alpha*this._beta)/(Math.pow(this._alpha+this._beta,2)*(this._alpha+this._beta+1));return ans;}});var StudentTDistribution=ContinuousDistribution.extend({init:function(degreesOfFreedom,mu){this._super('StudentT');this._dof=parseFloat(degreesOfFreedom);if(mu!=null){this._mu=parseFloat(mu);this._string="StudentT ("+this._dof.toFixed(2)+", "+this._mu.toFixed(2)+")";}else{this._mu=0.0;this._string="StudentT ("+this._dof.toFixed(2)+")";}},_pdf:function(x,give_log){if(give_log==null)give_log=false;if(this._mu==null){return this._dt(x,give_log);}else{var y=this._dnt(x,give_log);if(y>1){console.warn('x:'+x+', y: '+y);} +return y;}},_cdf:function(x,lower_tail,give_log){if(lower_tail==null)lower_tail=true;if(give_log==null)give_log=false;if(this._mu==null){return this._pt(x,lower_tail,give_log);}else{return this._pnt(x,lower_tail,give_log);}},_dt:function(x,give_log){var t,u;var n=this._dof;if(n<=0){console.warn('Invalid parameters in _dt');return Number.NaN;} +if(!jstat.isFinite(x)){return(give_log)?Number.NEGATIVE_INFINITY:0.0;} +if(!jstat.isFinite(n)){var norm=new NormalDistribution(0.0,1.0);return norm.density(x,give_log);} +t=-jstat.bd0(n/2.0,(n+1)/2.0)+jstat.stirlerr((n+1)/2.0)-jstat.stirlerr(n/2.0);if(x*x>0.2*n) +u=Math.log(1+x*x/n)*n/2;else +u=-jstat.bd0(n/2.0,(n+x*x)/2.0)+x*x/2.0;var p1=jstat.TWO_PI*(1+x*x/n);var p2=t-u;return(give_log)?-0.5*Math.log(p1)+p2:Math.exp(p2)/Math.sqrt(p1);},_dnt:function(x,give_log){if(give_log==null)give_log=false;var df=this._dof;var ncp=this._mu;var u;if(df<=0.0){console.warn("Illegal arguments _dnf");return Number.NaN;} +if(ncp==0.0){return this._dt(x,give_log);} +if(!jstat.isFinite(x)){if(give_log){return Number.NEGATIVE_INFINITY;}else{return 0.0;}} +if(!isFinite(df)||df>1e8){var dist=new NormalDistribution(ncp,1.);return dist.density(x,give_log);} +if(Math.abs(x)>Math.sqrt(df*jstat.DBL_EPSILON)){var newT=new StudentTDistribution(df+2,ncp);u=Math.log(df)-Math.log(Math.abs(x))+ +Math.log(Math.abs(newT._pnt(x*Math.sqrt((df+2)/df),true,false)- +this._pnt(x,true,false)));} +else{u=jstat.lgamma((df+1)/2)-jstat.lgamma(df/2) +-.5*(Math.log(Math.PI)+Math.log(df)+ncp*ncp);} +return(give_log?u:Math.exp(u));},_pt:function(x,lower_tail,log_p){if(lower_tail==null)lower_tail=true;if(log_p==null)log_p=false;var val,nx;var n=this._dof;var DT_0,DT_1;if(lower_tail){if(log_p){DT_0=Number.NEGATIVE_INFINITY;DT_1=1.;}else{DT_0=0.;DT_1=1.;}}else{if(log_p){DT_0=0.;DT_1=Number.NEGATIVE_INFINITY;}else{DT_0=1.;DT_1=0.;}} +if(n<=0.0){console.warn("Invalid T distribution _pt");return Number.NaN;} +var norm=new NormalDistribution(0,1);if(!jstat.isFinite(x)){return(x<0)?DT_0:DT_1;} +if(!jstat.isFinite(n)){return norm._cdf(x,lower_tail,log_p);} +if(n>4e5){val=1./(4.*n);return norm._cdf(x*(1.-val)/sqrt(1.+x*x*2.*val),lower_tail,log_p);} +nx=1+(x/n)*x;if(nx>1e100){var lval;lval=-0.5*n*(2*Math.log(Math.abs(x))-Math.log(n)) +-jstat.logBeta(0.5*n,0.5)-Math.log(0.5*n);val=log_p?lval:Math.exp(lval);}else{if(n>x*x){var beta=new BetaDistribution(0.5,n/2.);return beta._cdf(x*x/(n+x*x),false,log_p);}else{beta=new BetaDistribution(n/2.,0.5);return beta._cdf(1./nx,true,log_p);}} +if(x<=0.) +lower_tail=!lower_tail;if(log_p){if(lower_tail)return jstat.log1p(-0.5*Math.exp(val));else return val-M_LN2;} +else{val/=2.;if(lower_tail){return(0.5-val+0.5);}else{return val;}}},_pnt:function(t,lower_tail,log_p){var dof=this._dof;var ncp=this._mu;var DT_0,DT_1;if(lower_tail){if(log_p){DT_0=Number.NEGATIVE_INFINITY;DT_1=1.;}else{DT_0=0.;DT_1=1.;}}else{if(log_p){DT_0=0.;DT_1=Number.NEGATIVE_INFINITY;}else{DT_0=1.;DT_1=0.;}} +var albeta,a,b,del,errbd,lambda,rxb,tt,x;var geven,godd,p,q,s,tnc,xeven,xodd;var it,negdel;var ITRMAX=1000;var ERRMAX=1.e-7;if(dof<=0.0){return Number.NaN;}else if(dof==0.0){return this._pt(t);} +if(!jstat.isFinite(t)){return(t<0)?DT_0:DT_1;} +if(t>=0.){negdel=false;tt=t;del=ncp;}else{if(ncp>=40&&(!log_p||!lower_tail)){return DT_0;} +negdel=true;tt=-t;del=-ncp;} +if(dof>4e5||del*del>2*Math.LN2*(-(jstat.DBL_MIN_EXP))){s=1./(4.*dof);var norm=new NormalDistribution(del,Math.sqrt(1.+tt*tt*2.*s));var result=norm._cdf(tt*(1.-s),lower_tail!=negdel,log_p);return result;} +x=t*t;rxb=dof/(x+dof);x=x/(x+dof);if(x>0.){lambda=del*del;p=.5*Math.exp(-.5*lambda);if(p==0.){console.warn("underflow in _pnt");return DT_0;} +q=jstat.SQRT_2dPI*p*del;s=.5-p;if(s<1e-7){s=-0.5*jstat.expm1(-0.5*lambda);} +a=.5;b=.5*dof;rxb=Math.pow(rxb,b);albeta=jstat.LN_SQRT_PI+jstat.lgamma(b)-jstat.lgamma(.5+b);xodd=jstat.incompleteBeta(a,b,x);godd=2.*rxb*Math.exp(a*Math.log(x)-albeta);tnc=b*x;xeven=(tnc1)break;errbd=2.*s*(xodd-godd);if(Math.abs(errbd)1-1e-10&&lower_tail){console.warn("precision error _pnt");} +var res=jstat.fmin2(tnc,1.);if(lower_tail){if(log_p){return Math.log(res);}else{return res;}}else{if(log_p){return jstat.log1p(-(res));}else{return(0.5-(res)+0.5);}}},getDegreesOfFreedom:function(){return this._dof;},getNonCentralityParameter:function(){return this._mu;},getMean:function(){if(this._dof>1){var ans=(1/2)*Math.log(this._dof/2)+jstat.lgamma((this._dof-1)/2)-jstat.lgamma(this._dof/2) +return Math.exp(ans)*this._mu;}else{return Number.NaN;}},getVariance:function(){if(this._dof>2){var ans=this._dof*(1+this._mu*this._mu)/(this._dof-2)-(((this._mu*this._mu*this._dof)/2)*Math.pow(Math.exp(jstat.lgamma((this._dof-1)/2)-jstat.lgamma(this._dof/2)),2));return ans;}else{return Number.NaN;}}});var Plot=Class.extend({init:function(id,options){this._container='#'+String(id);this._plots=[];this._flotObj=null;this._locked=false;if(options!=null){this._options=options;}else{this._options={};}},getContainer:function(){return this._container;},getGraph:function(){return this._flotObj;},setData:function(data){this._plots=data;},clear:function(){this._plots=[];},showLegend:function(){this._options.legend={show:true} +this.render();},hideLegend:function(){this._options.legend={show:false} +this.render();},render:function(){this._flotObj=null;this._flotObj=$.plot($(this._container),this._plots,this._options);}});var DistributionPlot=Plot.extend({init:function(id,distribution,range,options){this._super(id,options);this._showPDF=true;this._showCDF=false;this._pdfValues=[];this._cdfValues=[];this._maxY=1;this._plotType='line';this._fill=false;this._distribution=distribution;if(range!=null&&Range.validate(range)){this._range=range;}else{this._range=this._distribution.getRange();} +if(this._distribution!=null){this._maxY=this._generateValues();}else{this._options.xaxis={min:range.getMinimum(),max:range.getMaximum()} +this._options.yaxis={max:1}} +this.render();},setHover:function(bool){if(bool){if(this._options.grid==null){this._options.grid={hoverable:true,mouseActiveRadius:25}}else{this._options.grid.hoverable=true,this._options.grid.mouseActiveRadius=25} +function showTooltip(x,y,contents,color){$('
'+contents+'
').css({position:'absolute',display:'none',top:y+15,'font-size':'small',left:x+5,border:'1px solid '+color[1],color:color[2],padding:'5px','background-color':color[0],opacity:0.80}).appendTo("body").show();} +var previousPoint=null;$(this._container).bind("plothover",function(event,pos,item){$("#x").text(pos.x.toFixed(2));$("#y").text(pos.y.toFixed(2));if(item){if(previousPoint!=item.datapoint){previousPoint=item.datapoint;$("#jstat_tooltip").remove();var x=jstat.toSigFig(item.datapoint[0],2),y=jstat.toSigFig(item.datapoint[1],2);var text=null;var color=item.series.color;if(item.series.label=='PDF'){text="P("+x+") = "+y;color=["#fee","#fdd","#C05F5F"];}else{text="F("+x+") = "+y;color=["#eef","#ddf","#4A4AC0"];} +showTooltip(item.pageX,item.pageY,text,color);}} +else{$("#jstat_tooltip").remove();previousPoint=null;}});$(this._container).bind("mouseleave",function(){if($('#jstat_tooltip').is(':visible')){$('#jstat_tooltip').remove();previousPoint=null;}});}else{if(this._options.grid==null){this._options.grid={hoverable:false}}else{this._options.grid.hoverable=false} +$(this._container).unbind("plothover");} +this.render();},setType:function(type){this._plotType=type;var lines={};var points={};if(this._plotType=='line'){lines.show=true;points.show=false;}else if(this._plotType=='points'){lines.show=false;points.show=true;}else if(this._plotType=='both'){lines.show=true;points.show=true;} +if(this._options.series==null){this._options.series={lines:lines,points:points}}else{if(this._options.series.lines==null){this._options.series.lines=lines;}else{this._options.series.lines.show=lines.show;} +if(this._options.series.points==null){this._options.series.points=points;}else{this._options.series.points.show=points.show;}} +this.render();},setFill:function(bool){this._fill=bool;if(this._options.series==null){this._options.series={lines:{fill:bool}}}else{if(this._options.series.lines==null){this._options.series.lines={fill:bool}}else{this._options.series.lines.fill=bool;}} +this.render();},clear:function(){this._super();this._distribution=null;this._pdfValues=[];this._cdfValues=[];this.render();},_generateValues:function(){this._cdfValues=[];this._pdfValues=[];var xs=this._range.getPoints();this._options.xaxis={min:xs[0],max:xs[xs.length-1]} +var pdfs=this._distribution.density(this._range);var cdfs=this._distribution.cumulativeDensity(this._range);for(var i=0;i